.. _installation:

Installation
============

**pyANCA Package**

*using pip* ::
   
    pip install pyanca

*using git* ::
    
    git clone https://github.com/ChakraLabPitt/pyanca
    
    Then go into  the pyanca folder and run
    python setup.py install 

.. Note:: pyanca has been tested on Linux (Ubuntu, RHEL 7.0) and Mac OSX systems. The code is undergoing 
          continuous development and certain components of the Python software is accelerated
          using C. 


*If you face any issues with the dependencies after installing pyanca try installing it separately using the 
following commands*

**Dependencies**

`numpy and scipy stack <https://www.scipy.org/install.html>`_ ::

    pip install scipy


`MDAnalysis <http://www.mdanalysis.org/MDAnalysisTutorial/installation.html>`_ ::

    conda config --add channels MDAnalysis
    conda install mdanalysis



`mdtraj <http://mdtraj.org/latest/installation.html>`_ ::

    conda install -c omnia mdtraj


`MSM Builder <http://msmbuilder.org/3.4.0/installation.html>`_ ::
    
    conda install -c omnia msmbuilder 

`pyEMMA <http://www.emma-project.org/latest/INSTALL.html>`_ ::
    
    conda config --add channels conda-forge
    conda install pyemma